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CENTER FOR PROTEOMICS AND BIOINFORMATICS

 
 

 

"Uncovering the structure and function of proteins is bringing scientists closer to understanding the underlying characteristics for a given disease, or correspondingly, wellness and most interestingly,
the variation in responses of individuals to diet, environmental stresses or therapeutic drugs."

Mark Chance, Ph.D.

 

Announcing the CCPB Pilot Program Grant Awardees

Department P.I. CCPB Collaborator Title
EECS/ Pharmacology Zhaoyang (John) Feng Masaru Miyagi/Chao Yuan Proteomic analysis of diet restriction pathway and the role of TOR signaling using a novel stable isotopic lysine labeling technique in C. elegans
CCF Molecular Biology Tao Lu Benlian Wang Identification and functional characterization of novel protein substrates of the F-box leucine rich protein (FBXL 11)
Biochemistry Steven Sanders Janna Kislear A proteomics screen to identify recognition modules for methylated histone H3 lysine 20
RNA Center Michael Harris Liwen Wang Analysis of enzyme mechanism using kinetic isotope effects by applying ESI-Q/TOF tandem MS
Genetics Paul Tesar Rob Ewing/Giri Gokulrangan Understanding the molecular networks underlying stem cell pluripotency: a proteomics approach

 

 

OCCBIO Tutorial: "Overview of and Statistical Analysis of "Omic" Data"

Jill Barnholtz-Sloan, Ph.D. - Asst. Professor, Case Cancer Center
Study Design and Analysis of "omic" Data

Jean-Eudes Dazard, Ph.D. - Visiting Asst. Professor, Epidemiology and Biostatistics
Statistical Issues in Assessing Differential Expression in Large Scale "Omics" Data

Mark Adams, Ph.D. - Associate Professor, Dept. of Genetics
Applications and Analysis Strategies for Next Generation Sequencing

Mark Chance, Ph.D. - Director, Center for Proteomics and Bioinformatics
Proteomics and Systems Biology: Statistical Approaches in Medicine

 

 

Case's Center for Proteomics and Bioinformatics

Modern biological research requires an advanced intellectual and physical infrastructure focused around biological computation and bioinformatics. This area of research, although it represents a fundamental scientific discipline, cuts across dozens of existing basic science and clinical departments at the School of Medicine. The school has had a need for a highly visible administrative home for bioinformatics research activities, especially those closely related to the analysis of genomic and proteomic data. The structures designed to guide these needs must bring together the strengths already at hand to build critical mass while at the same time promoting interdisciplinary cross-communication across the many existing scientific disciplines, especially those related to systems biology.

 

The Center has established three divisions which will be tasked with existing core consolidation where appropriate, program development and faculty recruitment consistent with developing the School of Medicine strategic plans.

 

Division of Proteomics and Genomics

The mission of the Division of Proteomics and Genomics is to support research in protein and gene expression analysis, protein and gene modifications, and protein interactions in a wide variety of biological contexts. The division also develops new tools in Proteomics and Genomics research. This includes multiple Proteomics Cores to support these activities.

 

Division of Bioinformatics

The mission of the Division of Bioinformatics is to support interdisciplinary research and training in many areas of bioinformatics including analysis of DNA and protein sequences, protein interaction networks, linkage and association studies for simple and complex traits, and gene and protein expression profiles. This includes a Bioinformatics Core that provides research support for these activities.

 

Division of Macromolecular Structure

The mission of the Division of Macromolecular Structure is to support interdisciplinary research in new methods of structure determination, the combination of computational and experimental structural biology approaches, and developing and maintaining infrastructure for macromolecular structure determination. The Division will work closely and coordinate their activities with faculty and Departments in the University who use structural information to understand function as well as other Centers that provide leadership in Structural Biology and Biophysics.