Selected Core and Collaborative Publications

 

2000

 

Apgar, J., Tseng, Y., Fedorov, E., Herwig, M.B., Almo, S.C., Wirtz, D. Multiple-particle tracking measurements of heterogeneities in solutions of actin filaments and actin bundles. Biophys J. 79: 1095-106 (2000).

 

Blaszczyk, J., Shi, G., Yan, H., Ji, X.  Catalytic Center Assembly of HPPK as Revealed by the Crystal Structure of a Ternary Complex at 1.25 Ǻ Resolution.  Structure Fold Des 8: 1049-1058 (2000).

 

Burke, E., Mahoney, N.M., Almo, S.C., Barik, S. Profilin is Required for Optimal Actin-Dependent Transcription of Respiratory Syncytial Virus Genome RNA. J. Virol. 74: 669-675 (2000).

 

Burley, S.K. An overview of structural genomics. Nature Struct. Biol. 7: 932-934 (2000).

 

Carr, G., Ramotowski, M., Miller, L.,M. Resolution Limits for Scanning Infrared Microspectroscopy: Theory and Practice.  Inst. of Physics Conf. Series, Vol. 165, p. 51, sponsored by Micro Beam Analysis, D. Williams and R. Shimizu (Ed.) (2000).

 

Dauter, Z., Dauter, M., Rajashankar, K.R. Derivatization by Short Cryo-Soaking with Halides. Acta Crystallographica D56: 232-237 (2000).

 

Davidson, G. Choudhury, S.B., Gu, Z., Bose, K., Roseboom, W. Albracht, S.P.J., Maroney, M.J. A Structural Examination of the Nickel site in Chromatium Vinosum Hydrogenase: Redox State Oscillations and Structural Changes Accompanying Reductive Activation and CO Binding. Biochemistry 39: 7468-79 (2000).

 

Davidson, G., Clugston, S.L., Honek, J.F., Maroney, M.J. An XAS Investigation of the Nickel Active Site Structure in Eschericia Coli Glyoxalase I. Inorg. Chem. 39: 2962-3 (2000).  

 

Deras, M.L., Brenowitz, M., Ralston, C.Y., Chance, M.R., Woodson, S.A.  Folding Mechanism of the Tetrahymena Ribozyme P4-P6 Domain.  Biochemistry 39: 10975-10985 (2000).

 

Dhavan, G.M., Crothers, D.M., Chance, M.R., Brenowitz, M.  Association Kinetics of the Integration Host Factor-DNA Complex by X-Ray Hydroxyl Radical Footprinting.  NSLS Activity Report 2-15-2-16 (2000).

 

DiDonato, M., Hsu, H.F., Narindrasorasak, S., Que, L., Jr., Sarkar, B. Copper Induced Changes in the N-Terminal Domain of the Wilson Disease Copper-Transporting ATPase. Biochemistry 39: 4112-4118 (2000).

 

Edwards, A.M., Zhang, K., Nordgren, C.E., Blasie, J.K. Heme Structure & Orientation in Single Monolayers of Cytochrome c on Polar & Nonpolar Soft Surfaces. Biophys. J. 79: 3105-17 (2000).

 

Gajiwala, K.S., Chen, H., Cornille, F., Roques, B.P., Reith, W., Mach, B., Burley, S.K. Structure of the Winged-Helix Protein hRFX1 Reveals a New Mode of DNA Binding. Nature 403: 916-921 (2000).

 

Groft, C.E., Beckmann, R., Sali, A., Burley, S.K.  Crystal Structure of Ribosome Anti-Association Factor eIF6.  Nature Struct. Biol. 7: 1156-1164 (2000).

 

Kleifeld, O., Frenkel Philippe, A., Bogin, O., Eisenstein, M., Brumfeld, V., Burstein, Y., Sagi, I. Spectroscopic Studies of Inhibited Alcohol Dehydrogenase from Thermoanaerobacter Brockii: Proposed Structure for the Catalytic Intermediate State. Biochemistry 39: 7702-11 (2000).

 

Lappi, S., Marinkovic, N., Chance, M.R., Franzen, S.  The Temperature Dependent Far-Infrared Analysis of Purine Nucleic Acid Compounds.  NSLS Activity Report 2-27-2-29 (2000).

 

Li, M., Phylip, L.H., Lees, W.E., Winther, J.R., Dunn, B.M., Wlodawer, A., Kay, J., Gustchina, A. The Aspartic Proteinase from Saccharomyces Cerevisiae Folds its own Inhibitor into a Helix. Nature Struct. Biol. 7: 113-117 (2000). 

 

Mahoney, N.M, Rastogi, V.K., Cahill, S., Girvin, M.E., Almo, S.C. A New Method to Determine the Binding Orientation of Proline-Rich Ligands in Solution: Polarity of the Profilin-Ligand Interaction. JACS 122: 7851-7852 (2000).

 

Marinkovic, N.S., Adzic, A.R., Sullivan, M., Kovacs, K., Miller, L.M., Rousseau, D.L., Yeh, S-R, Chance, M.R.  Design and Implementation of a Rapid-Mixer Flow-Cell for Time-Resolved Infrared Microspectroscopy.  Rev. Sci. Instru. 71: 4057-4060 (2000).

 

Maroney, M. J. Use of XAS for the Elucidation of Metal Structure and Function in Biological Molecules: Applications to Nickel Biochemistry. Metal Ions in Biology & Medicine 6: 331-333 (2000).

 

Melian, A., Watts, G.F., Shamshiev, A., De Libero, G., Clatworthy, A., Vincent, M., Brenner, M.B., Behar, S., Niazi, K., Modlin, R.L., Almo, S., Ostrov, D, Nathenson SG, Porcelli SA. Molecular recognition of human CD1b antigen complexes: evidence for a common pattern of interaction with alphabeta TCRs. J. Immunol. 165: 4494-4504 (2000).

 

Miller, L.M., Carr, G.L., Jackson, M., Dumas, P., Williams, G.P.  The Impact of Infrared Synchrotron Radiation  in Biology: Past, Present and Future.  Synchr. Rad. News 13: 31-38 (2000).

 

Miller, L.M., Dumas, P., Jamin, N., Teillaud, J., Bantignies, J., Carr, G.  Applications of Synchrotron Infrared Microspectroscopy to the Study of Biological Cells and Tissues.  Inst. of Physics Conf. Series, Vol. 165, p. 75-76, sponsored by Micro Beam Analysis, D. Williams and R. Shimizu (Ed.) 2000.

 

Miller, L.M., Tibrewala, J., Carlson, C.  Examination of Bone Chemical Composition in Osteoporosis Using Luorescence-Assisted Synchrotron Infrared Microspectroscopy.  Cell. Mol. Biol. 46: 1035-1044 (2000).

 

Miller, L.M., Tague, T. Novel Combination of Fluorescence Microscopy with Infrared Microspectroscopy. NSLS Newsletter March (2000).

 

Mueser, T.C., Jones, C.E., Nossal, N.G., Hyde, C.C. Bacteriophage T4 Gene 59 Helicase Assembly Protein Binds Replication Fork DNA. The 1.45 A Resolution Crystal Structure Reveals a Novel Alpha-Helical Two-Domain Fold. J. Mol. Biol. 296: 597-612 (2000).

 

Ostrov, D.A., Shi, W., Schwartz, J.-C., Almo, S.C., Nathenson, S.G. Structure of Murine CTLA-4 and its Role in T cell Responsiveness. Science 290: 81681-9 (2000).

 

Palm, G., Billy, E., Filipowicz, W., Wlodawer, A. Crystal Structure of RNA 3'-Terminal Phosphate Cyclase, an Ubiquitous Enzyme with Unusual Topology. Structure 8: 13-23 (2000).

 

Pan, J., Deras, M.L., Woodson, S.A. Fast Folding of a Ribozyme by Stabilizing Core Interactions: Evidence for Multiple Folding Pathways in RNA. J. Mol. Biol. 1: 133-144 (2000).

 

Pastor, N., Weinstein, H., Jamison, E., Brenowitz, M.  A Detailed Interpretation of OH Radical Footprints in a TBP-DNA Complex Reveals the Role of Dynamics in the Mechanism of Sequence-Specific Binding.  J. Mol. Biol. 304: 55-68 (2000).

 

Puius, Y., Fedorov, E., Eichinger, L., Schleicher, M., Almo, S.C. Mapping the Functional Surface of Domain 2 in the Gelsolin Superfamily. Biochemistry 39: 5322-5331 (2000).

 

Ralston, C.Y., He, Q., Brenowitz, M., Chance, M.R. Stability and Cooperativity of Individual Tertiary Contacts in RNA Revealed through Chemical Denaturation. Nature Struct. Biol. 7: 371-374 (2000).

 

Ralston, C.Y., Sclavi, B., Brenowitz, M., Sullivan, M., Chance, M.R. The Early Folding Intermediates of the Tetrahymena Ribozyme are Kinetically Trapped. J. Biomol. Struct. Dynam. 11: 195-200 (2000).

 

Ralston, C., Sclavi, B.  Chance, M.R., Brenowitz, M.  Time-Resolved Synchrotron X-Ray Footprinting and its Application to RNA Folding.  Methods Enzymol. 317: 353-368 (2000).

 

Roll-Mecak, A., Cao, C., Dever, T.E., Burley, S.K.  X-ray Structures of the Universal Translation Initiation Factor IF2/elF5B: Conformational Changes on GDP and GTP Binding. Cell 103: 781-792 (2000).

 

Sarmiento, M., Puius, Y., Vetter, S.W., Keng, Y.-F., Wu, L., Zhao, Y., Lawrence, D.S., Almo, S.C., Zhang, Z.Y. Structural Basis of Plasticity in Protein Tyrosine Phosphatase 1b Substrate Recognition.  Biochemistry 39: 8171-8179 (2000).

 

Seyhan, A.A., Burke, J.M. Mg2+ Independent Hairpin Ribozyme Catalysis in Hydrated RNA Films. RNA 6: 189-198 (2000).

 

Shi, W., Managala, N.R., Wang, C.W., Li, C.M., Tyler, P.C., Furneaux, R.H., Grubmeyer, C., Schramm, V.L. and Almo, S.C. Crystal Structures of Giardia lamblia guanine Phosphoribosyltransferase. Biochemistry 39: 6781-6790 (2000).

 

Shilov, S.V., Braiman, M.S., Mi, L.Z. Mid-IR Evanescent-Wave Sensors for Tiny Biological Samples in Biomedical Spectroscopy: Vibrational Spectroscopy and Other Techniques. SPIE 3918: 202-207 (2000).

 

Silverman, S.K., Deras, M.L., Woodson, S.A., Scaringe, S.A., Cech, T.R. Multiple Folding Pathways for the P4-P6 RNA Domain. Biochemistry 39: 12465-75 (2000).

 

Tague, T., Miller, L.M.  Novel Use of Fluorescence illumination with an Infrared Microscope.  Microscopy Today 2: 26-32 (2000).

 

Tsujishita, Y., Hurley, J.H. Structure and Lipid Transport Mechanism of a StAR-Related Domain. Nature Struct. Biol. 7: 408-414 (2000).

 

Walter, N.G., Yang, N., Burke, J.M. Probing Non-Selective Cation Binding in the Hairpin Ribozyme with Tb. J. Mol. Biol. 298: 539-555 (2000).

 

Wolven, A.K., Belmont, L.D., Mahoney, N.M., Almo, S.C., Drubin, D.G. In vivo importance of actin nucleotide exchange catalyzed by profiling. J. Cell. Biol. 150: 895-904 (2000).

 

Yang, F., Forrer, P., Dauter, Z., Conway, J.F., Cheng, N., Cerritelli, M.E., Steven, A.C., Plueckthun, Wlodawer, A. Novel Fold and Capsid-Binding Properties of the Lambda-Phage Display Platform Protein gpD. Nature Struct. Biol. 7: 230-237 (2000).

 

Yang, Z.N., Mueser, T.C., Bushman, F.D., Hyde, C.C. Crystal Structure of an Active Two-Domain Derivative of Rous Sarcoma Virus Integrase. J. Mol. Biol. 296: 535-548 (2000).